epicure

EpiCure: epithelia curation.

Here, you can find the code API to guide you on the code organization, to call EpiCure functions from external scripts (e.g. jupyter notebooks) or to contribute to EpiCure's development.

EpiCure's main function is epicuring. The classes inspecting, editing, tracking, outputing, displaying corresponds to EpiCure Inspect, Edit, Track, Output and Display onglets respectively.

The plugin is launched throught the start epicuring script that allows the user to choose the image to process, the corresponding segmentation and the epicure session parameters.

The file Utils contains a lot of small functions that are used by other functions and are general functions, independant of the current class/object.

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 1"""
 2**EpiCure: epithelia curation.**
 3
 4Here, you can find the code API to guide you on the code organization, to call EpiCure functions from external scripts (e.g. jupyter notebooks) or to contribute to EpiCure's development.
 5
 6EpiCure's main function is [epicuring](./epicure/epicuring.html). The classes [inspecting](./epicure/inspecting.html), [editing](./epicure/editing.html), [tracking](./epicure/tracking.html), [outputing](./epicure/outputing), [displaying](./epicure/displaying.html) corresponds to EpiCure Inspect, Edit, Track, Output and Display onglets respectively.
 7
 8The plugin is launched throught the [start epicuring](./epicure/start_epicuring.html) script that allows the user to choose the image to process, the corresponding segmentation and the epicure session parameters.
 9
10The file [Utils](./epicure/Utils.html) contains a lot of small functions that are used by other functions and are general functions, independant of the current class/object.
11"""